PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT19609
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family ARF
Protein Properties Length: 1151aa    MW: 128667 Da    PI: 6.6441
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT19609genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.17.1e-23123224199
               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
               f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++++l++
  EMT19609 123 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV--RDERQQLLL 219
               99*****************************954.4444.48************************************************..4577788** PP

               EEE-S CS
        B3  95 kvfrk 99 
               +++r+
  EMT19609 220 GIRRA 224
               *9997 PP

2Auxin_resp117.79.4e-39249332183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+fete+  +rr++Gt++g++dldpvrW+nS+Wr+L+
    EMT19609 249 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEELGTRRYMGTITGINDLDPVRWKNSQWRNLQ 332
                 79**********************************9*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-42112252IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-41115238IPR015300DNA-binding pseudobarrel domain
CDDcd100171.14E-19122214No hitNo description
SMARTSM010197.4E-23123225IPR003340B3 DNA binding domain
PROSITE profilePS5086311.899123225IPR003340B3 DNA binding domain
PfamPF023627.6E-21123224IPR003340B3 DNA binding domain
PfamPF065072.3E-33249332IPR010525Auxin response factor
PfamPF023095.2E-1010151102IPR033389AUX/IAA domain
PROSITE profilePS5174527.16610171101IPR000270PB1 domain
SuperFamilySSF542773.04E-710321096No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1151 aa     Download sequence    Send to blast
MGFRCVFSGE KKAPAINSDL WHACAGPLVQ LPPAGSLVVY FPQGHSEQVA ASMQKDVDAH  60
VPNYPNLPSK LICLLHNITL HADLETDEVY AQMTLQPVTS YGKEALQLSE LALKQARPQN  120
EFFCKTLTAS DTSTHGGFSV PRRAAEKIFP PLDFSMQPPA QEIQARDLHD NVWTFRHIYR  180
GQPKRHLLTT GWSLFVSGKR LFAGDSVIFV RDERQQLLLG IRRANRQPTN ISSSVLSSDS  240
MHIGILAAAA HAAANNSPFT IFYNPRASPT EFVIPFAKYQ KAVYGNQLSL GMRFRMMFET  300
EELGTRRYMG TITGINDLDP VRWKNSQWRN LQVGWDESAA GERRNRVSIW EIEPVAAPFF  360
ICPPPFFGAK RPRQLDDESS EMENLLKRAM PWLGEEICIK DPQTQNTIMP GLSLVQWMNM  420
NMQQSSSFAN TAMQSEYLRS ITNPSMQNIG SGDLSRQLCL QNQLLQQNNM QFNTPKLPQQ  480
MQPNNELSKA ALPLNQNGAS IKPEEQTQDA SNFQRQQQSM NYALPLSQAQ TNLAQAQVLI  540
QSQMQQQQQQ PHISQNQLPA VSQPLLSHQQ QQHHHQQQQQ QHQQQEQQHQ QQQQQQKFLQ  600
QQQLLLQQQQ LQQHQHQLQQ QQQQQLGKMP AQLPNLSNQQ LQLSDQQLQL QLLQKLQQQQ  660
QSLLSQPGVT LAQLPLIQEQ QKLLMDMQQQ LSSSHSLSQQ QMMPQQSTKI PSQVASLPPP  720
MQPDTTHQKL PQKQALPADT LEAAIPTTTS HKFSSANGSP LRMPGATHSV VTEEIPSCST  780
SPSTANGNHL LQPVPGRDQY SSMINTEKAP HSTAPMSVPS SLDAVTGAQR MTKELPKLNS  840
NVKQNMMPSK LPNGGAGPQN FANNAPPTDY LETASSATSV WLSQADGLLH PNFPMTNFSQ  900
QQLFKDAPPD TEIPAEIPSN NALFGISNDG HVGFPMVTDD FLTNGIDAVK YENHISTDID  960
NNYRIPKDAQ QEISSSMVSQ SFGASDMAFN SIDSGINDGA FLNKSSWPPA PPVKRMRTFT  1020
KVYKRGAVGR SIDISQYAGY EELKHALARM FSIEGQLEER QRIGWKLVYR DHEDDILLLG  1080
DDPWEEFVNC VKCIRILSPQ EVQQMSLDGD LGSSVVPNQA CSSSEGGGNA WRARCDQNSG  1140
NPSTGSYDQF E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-168835344388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3674960.0AK367496.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2058D09.
GenBankAK3697130.0AK369713.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2096H17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656453.20.0PREDICTED: auxin response factor 19
SwissprotQ0D9R70.0ARFS_ORYSJ; Auxin response factor 19
TrEMBLR7WG300.0R7WG30_AEGTA; Auxin response factor
STRINGOB06G34290.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19